A: If you're "out in the world" you shouldn't have to mask most of the time, you can use the background to help in the alignment, then use the selection tools in the dense cloud step to delete the points representing what you don't want in the final model. You would want to mask only when you have to rotate the item physically to see the back side or something.
B. Green sucks as a backdrop for most things, as it casts a green hue on your object which is difficult to impossible to remove. Yes it's easy to remove with masking software, but I'd take one thick white and one thick black sheet to use as a backdrop if/when you need it. Choose the one that has the most contrast vs. the object that you're photographing and lay it down on the ground or something if you're taking pictures of something you need to flip over to see the back of.
C. Use the masking tools in after effects or use a plugin like primatte in photoshop to automate the masking process. They both work pretty well.