Hi Dukytony,
Should work. You'll end up with a number of different camera calibrations though. Photoscan will do this automatically based on the EXIF info. For example, if you use the same camera & focal length but different resolutions, then you will get a new camera calibration added to the list for each resolution. The same is true if you change the focal length or if you change the camera; it just adds another camera calibration to the list (see TOOLS > CAMERA CALIBRATION).
However, for best possible results you should shoot the entire session using the same camera, focal length and resolutions to end up with a single camera calibration.
All the best.
Regards,
SAV