Hi Rbailey,
in principle it can be done by using a normal processed project with a robotic arm, from that export cameras in Agisoft xml-format. For every new project you have first load your new photos (must be from same positions and same directions as before of coarse) and then hit import cameras. Imediatelly after import of cameras you are prompted to build point cloud.
You can improve accuracy by involving coded markers.
(Btw. that is also possible with camera rigs as long as they are stable.)
Hope it helps
Kiesel