Hello M de Jong,
The calibration seems correct, so the issue is likely related to the referencing.
Possible reasons:
- partially incorrectly aligned cameras,
- mixed X and Y columns for reference coordinates,
- incorrect selection of the coordinate system,
- incorrect orientation angles loaded to Reference pane.
You can re-save the project in PSZ format with the alignment results only and send it to us (to support@agisoft.com), so that we could try to find out what is the main reason.