Hello ljurje,
Calibration panel data would be applied only to the images from the corresponding camera calibration group (in Camera Calibration dialog), so if you would like to have multiple flights be processed together, but have individual calibration panel for the reflectance calibration I can suggest to use the following approach:
- add each flight (together with the calibration panel images) to the separate chunk in the same workspace,
- use Merge Chunks option from the Workflow menu (to pre-processing of the data is needed),
- run reflectance calibration procedure and follow common processing pipeline.
With this approach of chunk merging you would have calibration groups formed automatically and you do not have to manually split the groups in the Camera Calibration dialog.
As for simultaneous processing of RGB sensor data together with multispectral Sequoia data, we do not recommend to do that. Maybe now something has been changed, but according to our experience RGB Sequoia sensor has very slow rolling-shutter and the images are severely distorted, if they are acquired while the camera is moving.