Hello neta,
Currently there's no built-in method in API to update the point cloud and disable tie points with less than two projections on the aligned images.
So if you want to reproduce the GUI behavior, you should disable tie points with custom code. Basically, just check the number of projections on aligned cameras for each tie point and if it is less than 2, then set enabled flag to False. Let me know, if any assistance with scripting this method is required.