Hello AndyVirt,
All you can do in the Standard edition to get some kind of rough manual scaling it the following:
- in the Preferences -> Appearance -> Model view section set Grid -> Cell Size to N meters,
- in the Model Menu -> Show/Hide Items section enable Show Grid option,
- switch to Orthographic view mode via Model Menu -> View Mode,
- and finally use Scale Object tool (also from the Model Menu or a Toolbar) in order to adjust the model size to the grid cells.
Without that the default object dimensions would have an arbitrary scale after each camera alignment.
There shouldn't be any difference in the point cloud and mesh model dimensions produced from the same project and it's strange that you are observing that. If you can reproduce it on a small project, could you please send it to support@agisoft com: a project that contains camera alignment, tie points, dense cloud and mesh (saved in PSZ format) and the exported point cloud and mesh that you are comparing in the external application.