Thanks for your reply,
I took off from a flat roof which was about the same height as the average height of the roofs. I set the altitude to 15M with a front and side overlap of 75%. From looking at the photos manually I do seem to have achieved this over most of the scene, however at the peak roof height (which I think was about 5M below the drone) it falls to 40% sidelap and 50% frontlap. This is roughly what I estimated as I assumed this would still work out OK for producing a 2.5D orthomosaic.
I have re-run the dense cloud with "Calculate point confidence" turned on and have filtered the dense cloud by confidence. As I increase the minimum confidence, lower parts of the roof do start disappearing, so I presume this does mean it's an overlap problem?
If so, the next step would be to re-fly over the roof a bit higher and ensuring more overlap? And then I could re-insert those photos into the project and mask out any ground areas where things may have changed?
Many thanks again for your help!
Paul