Thanks for the response
To clarify, green marker=user placed, blue marker=system placed, both used in processing, white marker=system placed but not used in processing, that's understood. I also understand I need to check all blue flags, as mentioned in the OP.
Correct me if I'm wrong, Add Marker adds a marker and works out the projections on the other images, Place marker adds it in 2D on that image only.
Not sure what you mean about the names not being important, please clarify. I need to match the names to update the coordinates from the GCP file. (That's a minor issue, as you can edit the GCP csv to match the labels, i.e. "point 1".)
At the moment you have two workflows as I see it, and my question is if they can be merged, as both are cumbersome in their own way.
WF1 - using add markers: Add marker by right clicking on each marker once, move a few blue flags, check the others and leave them if good enough. Then load GCP file with matching names to update the coordinates of the markers to the GCP. Issues are that you need to find each GCP, not always easy on e.g. glacial rubble.
WF2 - using a GCP file: Load GCP file, some white flags pop up, if you fix about 4 in place and Update Transform all other GCP are roughly located, which is better in terms of finding them. After manually updating a couple of markers each the others show up in the right place, but need to be clicked on to turn green. With several markers on several images each that's a lot of clicking.
So my question is, can you use the gcp workflow and get blue flags, best of both worlds.
This is not a big issue, but I'm trying to find the most efficient way of marking GCP, just tired of clicking markers, either way.