Hi Alexey and Costas and Isabel,
I notice that same issue persist when you want to create mesh, after selecting "filter by confidence" and deleting points I got visually same results (or so identical that I could say that are same)
I've done this on Agisoft Cloud, after deleting points locally, and I notice that generated mesh is the same on the spots which should be look way better cause I removed points.
I noticed this way before I saw that someone has same issue, but the reason why I did not reported issue at the time - because I thought there is something with my workflow....or I'm doing something wrong...
Overall...yeah it's strange when you remove bad points from dense cloud and then you naturally expect that you'll get better mesh, or in this case DEM...but in fact you get same result.
BTW QUESTION FOR ALEXEY PASUMANSKY - FOR AGISOFT CLOUD - CAN I SOMEHOW ADD CUSTOM GEOD INTO AGISOFT CLOUD? I TRIED TO PROCESS MY BIG PHOTOGRAMMETRY DATA BUT I NEED TO ADD GEOID FOR CROATIA, IS THAT SOMEHOW POSSIBLE FOR AGISOFT CLOUD?