This seems to be related to marker export/import from different camera setups (I was trying to avoid manually placing markers again).
Are you able to reproduce the issue on smaller subset of original imagery?
I can reproduce the issue with 5 sets of 4 images.
In the chunk with the jacobian size error, I imported markers from a chunk with the same set of images, but with each camera loaded separately and configured with an independent camera model in the camera calibration dialog. The chunk had been aligned.
I tried to export markers from the "independent" chunk and and import markers to the "multi-camera" chunk from the reference pane but got a "invalid format" message when importing, so I exported from one chunk and imported to the other with file/export/markers and file/import/markers.
What parameters you are using for Align Photos command and whether you can share the log with the error?
Alignment (no image positions):
Accuracy: High, generic preselection checked, kp limit 60000, tp limit 0, everything else unchecked.
Markers checked and scalebars checked: Alignment fails
Markers checked and
scalebars unchecked: Alignment succeedsI am aligning with no image coordinates, and using estimated coordinates for markers on the calibration plate (local coordinates). The coordinates were imported from estimated coordinates from a previous metashape project with a DSLR, which we used to validate the measurements of our machined measurements (scalebar values) on the calibration plate.
I can share the log but I don't think it's very informative. I'm guessing the relevant part to see where it's happening is:
#start of log excerpt
evaluating initial pair...
initial pair evaluated in 0.015 sec.
initial pair unstable, considering additional pairs.
additional pairs considered in 0 sec.
optimizing initial pair...
Finished processing in 3.994 sec (exit code 0)
Error: Wrong jacobian size