Hello Kjellis85,
Are you using Export/Import markers options in the Tools menu?
Are there any error messages in the console pane?
I am using my regular workflow, import "button" in reference section. My GCPs are stored as plain text, like this:
6654,7742522.307,659135.905,14.606,target 43
6655,7742524.167,659137.788,14.861,target 45
6656,7742522.920,659140.087,14.950,target 47
I set column values to label: 5 easting: 3 northing: 2 altitude: 4
This has always worked, but after going up to version 1.1 it fails to import anything.