Yes, that would make sense Alexey. I think I didn't explain myself correctly. What I am saying here is that I was doing the exact same "align photos" step for the exact same photos in the exact same project, but I ended up getting different results. I saved a project on two different hard drives, one of the files was on a network drive, and another was on a local drive and when I performed this analysis on each file, the accuracies were slightly different.
Could it be the way that the .jpg files are stored on an HD or something like that?