Which does bring up an interesting question of software based in camera correction - as used by a lot of newer cameras.
I haven't seen any sign of this being an issue though, having used M4/3s gear for panos, 360ยบ panos, and photoscan.
I agree with Nadar. Shadows and highlights adjustment, global exposure and contrast adjustment, etc should be fine (apply consistently to all images). I'd steer clear of anything like sharpening, cropping, straightening, etc.