Hello Oliver,
For large aerial data sets we recommend to use Ground Control pre-selection since it uses only a group of neighbouring photos in matching process, therefore significantly decreasing processing time.
The input format could be customized in version 0.8.5 (in respect of column separator, order and numbers of columns) if using "Character separated values" file-type when loading data into Ground Control pane.
It is possible to import X,Y,Z data and also Yaw, Pitch, Roll, but the latter three values are not obligatory.