Hello Michael,
Looks like you are rotating the object in front of static camera, but not using masks to cover the background. So the alignment issues are caused by high number of matching points found on the static background, that's why many cameras are "stacked" to the same position after the alignment process.
Additionally I suggest to take more images when to object is rotated by the shortest side to provide better overlap.
And the recommendations regarding the focal depth and image sharpness are still valid, since the quality of the images in 100% zoom is not so good due to noise and blur.