BT106,
Sorry for the delay.
So:
1. I'd recommend shooting RAW and converting those RAW images to 16-bit TIFF files. JPEG, in my opinion, are too compressed for Photoscan. You CAN use them. But the likelihood of there being compression artifacts is high and Photoscan won't appreciate that. If you have Photoshop, you can convert your RAW images to TIFF automatically. If you don't, there's probably another way to do it.
Alternately, I understand that Photoscan now handles .dng files. .dng is a raw format. It's an open-source Adobe product. There must be converters on the internet. I'm assuming your raw files are either .NEF (Nikon) or .CR2 (Canon).
Either way, you want to use your RAW files either as .dng or converted to 16-bit TIFF.
Let me know if you have any trouble with this and I'll help you out.
2. On the focus, got it. In Photoscan, in the "Photos" pane, change the viewer to "details". Then run that "Image Quality" button again. In the "details" view there will now be a column with numerical values that reflect the quality of each image. Photoscan recommends that you disable any shots below 0.5. Hopefully you don't have that many. Simply select the images below 0.5, right-click and select "disable."
3. ISO: Perfect. 100 is great.
4. I think your f-stop is too low. I would say put it up to f11 or even f16. I'm not sure if you're a photographer but this higher setting makes the opening that the light passes through in your lens smaller and increases depth of field. Meaning, more of your model will be in-focus from front to back. Having shallow depth of field in Photoscan is useless. We want as much of that model in-focus, front-to-back, as possible.
WARNING: You may find that ISO 100, f11 or f16 will give you dark photos. You might find you need a LOT of light. But, seeing as your camera is probably on a tripod, you can use a long shutter speed to make up for this. Use a cable release or set it to delayed shutter so there's no camera shake and you should be fine. It's all about super crisp, super low noise, super evenly lit shots.
5. Got it on your model being in the center of your turntable. That's good. Here's another tip, print a scale chart and put your model ON it. A student named Samantha Porter made some for her work that are downloadable and she also put together some terrific tutorials. Check these links:
https://www.youtube.com/watch?v=qKWjPNlRK_II couldn't find the link to those scales so I've included them. You could always write to her if you want.
These scales will also help you scale your eventual model.
6. On the quantity of photos, yes: shoot at those angles. I generally shoot head-on, from top looking down and (if possible) from down looking up. That way you get every nook and cranny. Personally, I don't think you can take too many photos. You can always disable in Photoscan if you find you have too many.
7. As covered above (image quality setting).
8. Well, this masking business has many different techniques. Try just pulling your shots into Photoscan and manually masking each one with Photoscan's masking tools. Skip the external masks for now. This sounds tedious and it will be. But you don't have to make exact masks. Just draw a marquee around the general shape of your model and move on to the next one. I learned this trick at a seminar. I'd recommend watching it. It's fairly long but this guy knows what he's talking about. Here's a link:
http://livestream.com/gnomonYou will want to watch "An Evening with Alex Alvarez." It looks like it's archived but that doesn't mean it's not available. It's an A to Z on Agisoft Photoscan as well as being really interesting stuff. And Alex Alvarez is quite inspired so it's not boring or anything like that.
Okay. I think I answered your questions. This photogrammetry can be tough going at first. So many pitfalls. But this forum is a great place to learn and if you've got the time, there are some terrific videos and papers on the internet.
Hopefully this is helpful. I'm no expert yet but I've been at this for a little while and I can get some very nice looking models with my rudimentary training...
Let me know if you need anything else.
Jon