Hello Dvoralai,
Latest version 1.2.5 should work fine with Micasense cameras, but you need to follow simple recommendations on adding images: use Add Photos command and select all the images at once (shouldn't be any missing bands for any camera positions, so five images per camera position for RedEdge, for example), PhotoScan will scan the images and shortly after will propose different options of chunk creation, you need to select Mutlispectral Chunk option.
For such kind of imagery PhotoScan will assume that all images related to the individual bands were taken from the same camera position, but the orientation may be different as well as lens parameters. So for each camera you will find several "planes" in the Camera Calibration window.