Hello Mike,
PhotoScan should produce the same results as StereoScan on a pair of images when Exact reconstruction method is used. Please also note that there is a "Decimate mesh" option in the StereoScan Preferences dialog that automatically reduces the number of faces in the final model when enabled.
If you still observe mismatch in the reconstruction results, please provide a pair of photos that demonstrate the problem.
P.S. We have replied your email on Wednesday, so I am just duplicating it here.
With best regards,
Dmitry Semyonov
AgiSoft LLC