Hi Alexey
Concerning the exportation of the orthomosaic as a JPEG image, the problem might have been related with the reuse of a project processed in version 1.3.4- The same project processed from ground up in version 1.4.0 has no problems. The image will export as a JPEG without a problem. Relative to the QGIS dealing with tiff images exported from PS, Tiff overviews do matter. If they are not generated the image is almost impossible to visualize in QGIS. It tiff overviews are rendered, the image will render just fine and quickly, despite of it's size. For this reason, if the objective is to use the ortho in a GIS environment, it's recommended to activate the Tiff Overviews option while exporting.
Cheers