Hello photoscan_user,
1 and 2 are actually the same.
If you mean autofinding the correspondence between the found markers (unsorted) and list with the coordinates, you can use Ignore Labels option in the Import CSV dialog when loading markers coordinates. PhotoScan will try to find the correspondences automatically and rename the markers in the projects according to the loaded list.
However, it works more stable, if you have considerable amount of markers, like 10-15 in the list.