Hello Kjellis,
Unfortunately we haven't made thorough comparison of GeForce vs Radeon yet, but our preliminary tests show that GeForce outperforms Radeon on PhotoScan algorithms.
For your specific configuration, I would recommend to run the same reconstruction twice with GPU acceleration enabled and disabled to see the difference. PhotoScan prints processing time in the Output pane after finalizing each processing step. Processing time for the specific chunk as well as some other information can be also displayed using "Show Info..." command from the chunk context menu.
With best regards,
Dmitry Semyonov
AgiSoft LLC